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POPTR_0001s38480.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s38480.1" - Predicted protein, mRNA [source:RefSeq DNA_predicted in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s38480.1Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002300382.1] (414 aa)    
Predicted Functional Partners:
POPTR_0002s11400.1
KNOX3 [source-UniProtKB/TrEMBL;Acc-A7XAI6_POPTR] (178 aa)
           
  0.579
KNOX
KNOX3 [source-UniProtKB/TrEMBL;Acc-A7XAJ1_POPTR] (260 aa)
           
  0.579
POPTR_0005s22480.1
Predicted protein (322 aa)
       
      0.535
POPTR_0002s06000.1
Predicted protein (325 aa)
       
      0.535
POPTR_0002s15360.1
Predicted protein (348 aa)
     
   
  0.514
POPTR_0014s07450.1
Predicted protein (396 aa)
           
  0.495
POPTR_0011s11600.1
NAC domain protein, IPR003441 [source-UniProtKB/TrEMBL;Acc-B9HZR2_POPTR] (358 aa)
           
  0.424
POPTR_0011s01590.1
Shoot meristemless-like protein [source-UniProtKB/TrEMBL;Acc-A7XAG0_POPTR] (148 aa)
           
  0.424
POPTR_0004s00650.1
Annotation not available (166 aa)
           
  0.424
POPTR_0001s40680.1
NAC domain protein, IPR003441 [source-UniProtKB/TrEMBL;Acc-B9N1D6_POPTR] (330 aa)
           
  0.424
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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