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STRINGSTRING
POPTR_0001s39290.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s39290.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s39290.1Uncharacterized protein (320 aa)    
Predicted Functional Partners:
POPTR_0010s23890.1
Uncharacterized protein (361 aa)
         
  0.881
POPTR_0013s07440.1
Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. gTMT family (349 aa)
           
  0.741
POPTR_1135s00210.1
annotation not available (96 aa)
         
  0.675
POPTR_1135s00200.1
annotation not available (174 aa)
         
  0.675
POPTR_0009s07860.1
Uncharacterized protein (313 aa)
         
  0.675
POPTR_0001s28680.1
Uncharacterized protein (241 aa)
         
  0.675
POPTR_0002s10530.1
Clathrin adaptor complexes medium subunit family protein; Belongs to the adaptor complexes medium subunit family (446 aa)
           
  0.635
POPTR_0006s21200.1
Uncharacterized protein (391 aa)
     
   
  0.621
POPTR_0009s05960.1
Uncharacterized protein (566 aa)
           
  0.603
POPTR_0001s26770.1
Uncharacterized protein; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily (156 aa)
           
  0.603
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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