STRINGSTRING
POPTR_0001s40100.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s40100.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s40100.1Uncharacterized protein (375 aa)    
Predicted Functional Partners:
POPTR_0001s17840.1
DNA repair family protein (340 aa)
     
 
  0.989
POPTR_0015s10030.1
DNA-(apurinic or apyrimidinic site) lyase (366 aa)
   
 
  0.965
POPTR_0003s08280.1
Uncharacterized protein (506 aa)
       
 
  0.963
POPTR_0011s10870.1
Ku70-like family protein (628 aa)
       
 
  0.961
POPTR_0011s10840.1
annotation not available (115 aa)
       
 
  0.961
POPTR_0012s05670.1
Muts homolog 2 family protein; Component of the post-replicative DNA mismatch repair system (MMR) (944 aa)
     
   
  0.946
CPE902
Structural maintenance of chromosomes protein; Condensin complex components subunit [source-UniProtKB/TrEMBL;Acc-B9H079_POPTR] (1176 aa)
     
   
  0.932
CPE901
Structural maintenance of chromosomes protein; Condensin complex components subunit [source-UniProtKB/TrEMBL;Acc-B9MUI8_POPTR] (1176 aa)
     
   
  0.932
POPTR_0018s13870.1
DNA ligase (1242 aa)
   
 
  0.930
POPTR_0010s24070.1
annotation not available (88 aa)
       
 
  0.917
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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