STRINGSTRING
POPTR_0001s40700.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s40700.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s40700.1Predicted protein (182 aa)    
Predicted Functional Partners:
POPTR_0010s07920.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHA2_POPTR] (153 aa)
     
   
  0.789
POPTR_0008s16970.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002312554.1] (104 aa)
     
   
  0.779
POPTR_0013s06700.1
Predicted protein (139 aa)
     
        0.767
POPTR_0006s11420.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PC28_POPTR] (224 aa)
     
   
  0.757
POPTR_0006s23770.1
Predicted protein (290 aa)
     
   
  0.754
POPTR_0002s08900.1
Predicted protein (168 aa)
     
        0.750
POPTR_0005s16160.1
Predicted protein (168 aa)
     
        0.749
POPTR_0004s22660.1
Predicted protein (198 aa)
     
   
  0.746
POPTR_0013s11720.1
Predicted protein (257 aa)
     
        0.743
POPTR_0155s00210.1
Predicted protein (165 aa)
     
        0.743
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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