STRINGSTRING
POPTR_0001s40800.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s40800.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s40800.1Predicted protein (419 aa)    
Predicted Functional Partners:
POPTR_0006s14500.1
Predicted protein (250 aa)
       
  0.953
POPTR_0001s01490.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P8H7_POPTR] (216 aa)
       
  0.953
POPTR_0008s20340.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PAW4_POPTR] (345 aa)
     
  0.950
POPTR_0067s00220.1
Uncharacterized protein (117 aa)
       
  0.948
POPTR_0019s08510.1
Predicted protein (349 aa)
       
  0.948
POPTR_0016s01330.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002323117.1] (208 aa)
       
  0.948
POPTR_0016s01310.1
Predicted protein (339 aa)
       
  0.948
POPTR_0014s16020.1
Predicted protein (352 aa)
       
  0.948
POPTR_0010s02960.1
Hypothetical protein (184 aa)
       
  0.948
POPTR_0010s02950.1
Uncharacterized protein (136 aa)
       
  0.948
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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