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STRINGSTRING
POPTR_0001s40950.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s40950.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s40950.1Uncharacterized protein (62 aa)    
Predicted Functional Partners:
POPTR_0005s21370.1
annotation not available (1103 aa)
     
 
  0.954
POPTR_0002s06950.1
Exocyst complex component Sec5 family protein (1101 aa)
     
 
  0.954
POPTR_0014s03860.1
Uncharacterized protein (886 aa)
     
 
  0.936
POPTR_0002s13280.1
Uncharacterized protein (886 aa)
     
 
  0.936
POPTR_0014s08590.1
Exocyst complex component Sec10-related family protein (732 aa)
     
 
  0.931
POPTR_0002s16570.1
annotation not available (582 aa)
     
 
  0.931
POPTR_0002s16560.1
annotation not available (140 aa)
     
 
  0.931
POPTR_0016s03190.1
Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane (789 aa)
     
 
  0.927
POPTR_0014s12220.1
Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane (806 aa)
     
 
  0.927
POPTR_0006s03270.1
Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane (789 aa)
     
 
  0.927
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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