STRINGSTRING
POPTR_0001s41380.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s41380.1" - Annotation not available in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s41380.1Annotation not available (130 aa)    
Predicted Functional Partners:
POPTR_0014s12520.1
Predicted protein (151 aa)
       
      0.596
POPTR_0009s06850.1
Predicted protein (99 aa)
       
      0.596
POPTR_0002s20720.1
Predicted protein (150 aa)
       
      0.596
POPTR_0001s27630.1
Predicted protein (99 aa)
       
      0.596
POPTR_0393s00210.1
Predicted protein (420 aa)
       
      0.482
POPTR_0017s12240.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PID6_POPTR] (548 aa)
       
      0.482
POPTR_0016s03770.1
Chloroplast cystathionine beta lyase family protein (464 aa)
       
      0.482
POPTR_0006s03970.1
Annotation not available (246 aa)
       
      0.482
POPTR_0003s18600.1
Predicted protein (417 aa)
       
      0.482
POPTR_0003s18590.1
Predicted protein (433 aa)
       
      0.482
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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