STRINGSTRING
POPTR_0001s41750.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s41750.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s41750.1Predicted protein (317 aa)    
Predicted Functional Partners:
POPTR_0007s12000.1
Predicted protein (260 aa)
   
   
  0.789
POPTR_0006s04760.1
Predicted protein (510 aa)
   
   
  0.741
POPTR_0004s04220.1
Glutaredoxin S17 (PtrcGrx_S17.2), mRNA [source-RefSeq DNA_predicted;Acc-XM_002305767.1] (437 aa)
         
  0.676
POPTR_0002s07180.1
Predicted protein (291 aa)
         
  0.623
POPTR_0009s11490.1
Uncharacterized protein (446 aa)
 
   
  0.618
POPTR_0019s08240.1
Thioredoxin f [source-UniProtKB/TrEMBL;Acc-A9PI12_POPTR] (188 aa)
   
   
  0.607
POPTR_0005s26700.1
Predicted protein (299 aa)
   
   
  0.603
POPTR_0006s15520.1
Predicted protein (220 aa)
   
   
  0.602
POPTR_0016s05950.1
Predicted protein (194 aa)
   
   
  0.602
POPTR_0007s07520.1
Thioredoxin x [source-UniProtKB/TrEMBL;Acc-B9HGF9_POPTR] (183 aa)
   
   
  0.601
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (11%) [HD]