STRINGSTRING
POPTR_0001s41800.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s41800.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s41800.1Predicted protein (747 aa)    
Predicted Functional Partners:
POPTR_0001s32760.1
Predicted protein (1316 aa)
   
  0.997
POPTR_0004s09310.1
Predicted protein (1142 aa)
     
  0.988
POPTR_0011s10870.1
Predicted protein (628 aa)
     
  0.987
POPTR_0004s18540.1
Predicted protein (2740 aa)
     
  0.986
POPTR_0011s10840.1
Uncharacterized protein (115 aa)
     
  0.983
POPTR_0015s12710.1
Predicted protein (517 aa)
     
  0.982
POPTR_0005s11310.1
Predicted protein (613 aa)
     
  0.981
POPTR_0013s00270.1
Uncharacterized protein ; Structure-specific nuclease with 5’-flap endonuclease and 5’-3’ exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5’-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5’-end of a downstream Okazaki fragment. It enters the flap from the 5’-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts [...] (360 aa)
   
  0.980
POPTR_0014s07330.1
Predicted protein (615 aa)
   
  0.980
POPTR_0015s13250.1
Predicted protein (541 aa)
   
  0.979
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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