• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
POPTR_0001s41980.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s41980.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s41980.1Uncharacterized protein (114 aa)    
Predicted Functional Partners:
POPTR_0004s08580.1
Uncharacterized protein (898 aa)
       
 
  0.918
POPTR_0011s14970.1
annotation not available (1268 aa)
       
 
  0.912
POPTR_0001s45950.1
Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family (1240 aa)
       
 
  0.912
POPTR_0010s02900.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGN7_POPTR] (1594 aa)
       
 
  0.904
POPTR_0001s07300.1
Uncharacterized protein (425 aa)
       
 
  0.904
POPTR_0013s02590.1
Ca2+ antiporter/cation exchanger; Belongs to the Ca(2+)-cation antiporter (CaCA) (TC 2.A.19) family (539 aa)
       
 
  0.739
POPTR_0014s05590.1
Uncharacterized protein (600 aa)
           
  0.684
TUBGCP4
Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome (711 aa)
     
 
  0.627
TUBG1
Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome (474 aa)
     
 
  0.596
POPTR_0002s16930.1
Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome (443 aa)
     
 
  0.596
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (8%) [HD]