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POPTR_0001s42170.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s42170.1" - YL1 nuclear family protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s42170.1YL1 nuclear family protein; Sequence-specific DNA binding transcription factors;DNA binding;DNA binding (355 aa)    
Predicted Functional Partners:
POPTR_0014s11270.1
Myb family transcription factor family protein (443 aa)
     
 
  0.990
POPTR_0013s14880.1
Uncharacterized protein (172 aa)
       
 
  0.983
POPTR_0009s16220.1
RuvB-like helicase; Belongs to the RuvB family (441 aa)
       
 
  0.972
POPTR_0004s20930.1
annotation not available (455 aa)
       
 
  0.972
POPTR_0016s10950.1
RuvB-like helicase; Belongs to the RuvB family (467 aa)
     
 
  0.968
POPTR_0006s12040.1
RuvB-like helicase; Belongs to the RuvB family (467 aa)
     
 
  0.968
POPTR_0001s21490.1
Uncharacterized protein (1592 aa)
     
 
  0.954
CHR928
PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 family protein; Chromatin remodeling complex subunit [source-UniProtKB/TrEMBL;Acc-B9GZR8_POPTR] (1682 aa)
     
 
  0.954
POPTR_0010s16110.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHA5_POPTR] (287 aa)
       
 
  0.953
POPTR_0003s01660.1
Uncharacterized protein (418 aa)
     
 
  0.953
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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