STRINGSTRING
POPTR_0001s42660.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s42660.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s42660.1Predicted protein (201 aa)    
Predicted Functional Partners:
POPTR_0007s08400.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P8C9_POPTR] (843 aa)
     
  0.618
POPTR_0007s08390.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PIF0_POPTR] (843 aa)
     
  0.618
POPTR_0005s10090.1
Predicted protein (843 aa)
     
  0.618
POPTR_0009s00670.1
Uncharacterized protein (114 aa)
       
 
  0.599
POPTR_0002s02250.1
Predicted protein (258 aa)
       
 
  0.599
POPTR_0016s02920.1
Predicted protein (112 aa)
       
      0.599
POPTR_0006s03080.1
Predicted protein (457 aa)
       
      0.599
POPTR_0018s00300.1
Predicted protein (243 aa)
       
    0.590
POPTR_0014s09000.1
Predicted protein (241 aa)
       
    0.590
POPTR_0009s01580.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PH32_POPTR] (257 aa)
       
    0.590
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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