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POPTR_0001s42680.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s42680.1" - Predicted protein, mRNA [source:RefSeq DNA_predicted in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s42680.1Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002300441.1] (386 aa)    
Predicted Functional Partners:
POPTR_0015s04910.1
Annotation not available (199 aa)
       
 
  0.509
POPTR_0012s04200.1
Annotation not available (277 aa)
       
 
  0.509
POPTR_0012s04180.1
Annotation not available (157 aa)
       
 
  0.509
POPTR_0002s07400.1
Uncharacterized protein (205 aa)
   
 
  0.474
POPTR_0011s14970.1
Uncharacterized protein (1268 aa)
       
 
  0.468
POPTR_0001s45950.1
Predicted protein (1240 aa)
       
 
  0.468
POPTR_0091s00240.1
Predicted protein (170 aa)
   
 
      0.451
POPTR_0011s13020.1
Uncharacterized protein (220 aa)
   
      0.439
POPTR_0009s13360.1
Predicted protein (303 aa)
   
 
  0.423
POPTR_0465s00200.1
Uncharacterized protein (170 aa)
   
          0.421
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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