STRINGSTRING
POPTR_0001s42940.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s42940.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s42940.1Predicted protein (554 aa)    
Predicted Functional Partners:
POPTR_0016s09300.1
Predicted protein (606 aa)
           
  0.477
POPTR_0014s11740.1
Predicted protein (547 aa)
           
  0.424
POPTR_0010s23650.1
NAC domain protein, IPR003441 [source-UniProtKB/TrEMBL;Acc-B9HUM1_POPTR] (556 aa)
           
  0.424
POPTR_0008s03170.1
Uncharacterized protein (557 aa)
           
  0.424
POPTR_0007s04780.1
NAC domain protein, IPR003441 [source-UniProtKB/TrEMBL;Acc-B9HF58_POPTR] (304 aa)
           
  0.424
POPTR_0005s20240.1
NAC domain protein, IPR003441 [source-UniProtKB/TrEMBL;Acc-B9H7H2_POPTR] (279 aa)
           
  0.424
POPTR_0005s15890.1
Predicted protein (468 aa)
           
  0.424
POPTR_0005s07060.1
NAC domain protein, IPR003441 [source-UniProtKB/TrEMBL;Acc-B9H4N3_POPTR] (307 aa)
           
  0.424
POPTR_0003s06930.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P821_POPTR] (380 aa)
           
  0.424
POPTR_0002s19840.1
Predicted protein (565 aa)
           
  0.424
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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