STRINGSTRING
POPTR_0001s45610.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s45610.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s45610.1Predicted protein (349 aa)    
Predicted Functional Partners:
POPTR_0005s16180.1
Predicted protein; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (899 aa)
     
   
  0.520
POPTR_0002s08930.1
Predicted protein; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (909 aa)
     
   
  0.518
POPTR_0012s09880.1
Predicted protein (631 aa)
         
  0.509
POPTR_0016s10900.1
Uncharacterized protein (450 aa)
           
  0.508
POPTR_0009s00930.1
Predicted protein (955 aa)
           
  0.508
POPTR_0006s25620.1
Aquaporin, MIP family, TIP subfamily (247 aa)
           
  0.508
POPTR_0006s24050.1
Predicted protein (165 aa)
           
  0.508
POPTR_0006s12180.1
Annotation not available (489 aa)
           
  0.508
POPTR_0006s08370.1
Annotation not available (424 aa)
           
  0.508
POPTR_0004s22720.1
Predicted protein (973 aa)
           
  0.508
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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