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STRINGSTRING
POPTR_0001s45800.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s45800.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s45800.1Uncharacterized protein (216 aa)    
Predicted Functional Partners:
POPTR_0011s09710.1
Uncharacterized protein (346 aa)
           
  0.689
POPTR_0001s38010.1
Uncharacterized protein (341 aa)
           
  0.689
POPTR_0010s17540.1
Zinc finger family protein (218 aa)
           
  0.625
POPTR_0016s12270.1
Uncharacterized protein (241 aa)
           
  0.584
POPTR_0009s05000.1
Zinc finger family protein (243 aa)
           
  0.584
POPTR_0006s10050.1
Uncharacterized protein (246 aa)
           
  0.584
POPTR_0001s25790.1
Uncharacterized protein (244 aa)
           
  0.584
POPTR_0013s05700.1
Uncharacterized protein (344 aa)
           
  0.578
POPTR_0003s20780.1
Zinc finger family protein (388 aa)
           
  0.578
POPTR_0001s03880.1
Uncharacterized protein (382 aa)
           
  0.578
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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