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POPTR_0001s46130.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s46130.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s46130.1Uncharacterized protein (75 aa)    
Predicted Functional Partners:
POPTR_0019s07190.1
Uncharacterized protein (185 aa)
   
   
  0.738
POPTR_0019s04120.1
Uncharacterized protein (82 aa)
   
   
  0.736
POPTR_0018s07700.1
Uncharacterized protein (96 aa)
   
   
  0.736
POPTR_0107s00220.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002333633.1] (97 aa)
   
   
  0.723
POPTR_0010s10350.1
Uncharacterized protein (108 aa)
   
   
  0.715
POPTR_0016s11450.1
Predicted protein (282 aa)
   
     
  0.660
POPTR_0009s01040.1
Cytochrome b6 [source-UniProtKB/TrEMBL;Acc-A4GYU1_POPTR] (62 aa)
   
     
  0.588
POPTR_1814s00200.1
Photosystem II D2 protein [source-UniProtKB/Swiss-Prot;Acc-PSBD_POPTR] (87 aa)
   
          0.526
POPTR_0014s19200.1
Uncharacterized protein (78 aa)
   
          0.516
POPTR_0023s00610.1
Uncharacterized protein (71 aa)
   
          0.510
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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