Groups of genes that are frequently observed in each other's genomic neighborhood.
Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Uncharacterized protein (337 aa)
Predicted Functional Partners:
Uncharacterized protein (424 aa)
GTP-binding family protein; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PEM5_POPTR] (387 aa)
Uncharacterized protein (600 aa)
Uncharacterized protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- nucleus; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Digestive organ expansion factor, predicted (I /.../o-IPR010678); Has 25006 Blast hits to 13379 proteins in 904 species- Archae - 102; Bacteria - 5571; Metazoa - 7448; Fungi - 3168; Plants - 1056; Viruses - 466; Other Eukaryotes - 7195 (source- NCBI BLink) (687 aa)
Uncharacterized protein (247 aa)
DNA-directed RNA polymerase I(A) and III(C) 14 kDa subunit family protein (102 aa)
Uncharacterized protein (322 aa)
Uncharacterized protein (623 aa)
Transducin family protein (459 aa)
Transducin family protein (472 aa)
Your Current Organism:
NCBI taxonomy Id: 3694 Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar