• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
POPTR_0001s46540.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s46540.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s46540.1Uncharacterized protein (337 aa)    
Predicted Functional Partners:
POPTR_0001s23510.1
Uncharacterized protein (424 aa)
     
   
  0.961
POPTR_0005s23150.1
GTP-binding family protein; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PEM5_POPTR] (387 aa)
     
      0.960
POPTR_0002s24220.1
Uncharacterized protein (600 aa)
     
      0.960
POPTR_0022s00850.1
Uncharacterized protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- nucleus; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Digestive organ expansion factor, predicted (I /.../o-IPR010678); Has 25006 Blast hits to 13379 proteins in 904 species- Archae - 102; Bacteria - 5571; Metazoa - 7448; Fungi - 3168; Plants - 1056; Viruses - 466; Other Eukaryotes - 7195 (source- NCBI BLink) (687 aa)
     
   
  0.954
POPTR_0001s08790.1
Uncharacterized protein (247 aa)
     
   
  0.949
POPTR_0001s25380.1
DNA-directed RNA polymerase I(A) and III(C) 14 kDa subunit family protein (102 aa)
     
   
  0.921
POPTR_0006s14820.1
Uncharacterized protein (322 aa)
     
   
  0.901
POPTR_0001s28980.1
Uncharacterized protein (623 aa)
     
   
  0.901
POPTR_0007s05350.1
Transducin family protein (459 aa)
     
 
  0.899
POPTR_0005s07580.1
Transducin family protein (472 aa)
     
 
  0.899
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (6%) [HD]