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POPTR_0001s46990.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s46990.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s46990.1Predicted protein (347 aa)    
Predicted Functional Partners:
POPTR_0009s08230.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PIH7_POPTR] (713 aa)
   
  0.954
POPTR_0009s08220.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PF49_POPTR] (542 aa)
   
  0.954
POPTR_0005s19150.1
Hypothetical protein (394 aa)
   
  0.954
POPTR_0001s29010.1
Predicted protein (246 aa)
   
  0.954
POPTR_0001s28990.1
Predicted protein (542 aa)
   
  0.954
POPTR_0018s04360.1
Annotation not available (182 aa)
 
 
  0.952
POPTR_0384s00200.1
Uncharacterized protein (159 aa)
 
 
  0.950
POPTR_0006s28000.1
Predicted protein (377 aa)
 
 
  0.947
POPTR_0015s08540.1
Aldehyde dehydrogenase 1 precursor family protein (497 aa)
   
  0.946
POPTR_0012s08010.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P844_POPTR] (536 aa)
   
  0.946
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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