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POPTR_0001s47060.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0001s47060.1" - Predicted protein, mRNA [source:RefSeq DNA_predicted in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0001s47060.1Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002320043.1] (322 aa)    
Predicted Functional Partners:
POPTR_0007s10600.1
Exonuclease family protein (463 aa)
           
  0.547
POPTR_0007s04080.1
DNA cross-link repair family protein (537 aa)
           
  0.547
POPTR_0004s06620.1
annotation not available (629 aa)
           
  0.547
POPTR_0010s05760.1
Phosphatase 2C family protein (397 aa)
     
   
  0.521
POPTR_0016s06510.1
annotation not available (96 aa)
           
  0.487
POPTR_0006s21330.1
annotation not available (96 aa)
           
  0.487
POPTR_1117s00200.1
annotation not available (314 aa)
   
        0.456
ETR6
Ethylene receptor; May act early in the ethylene signal transduction pathway, possibly as an ethylene receptor, or as a regulator of the pathway (763 aa)
   
          0.448
POPTR_0017s13810.1
Chaperonin family protein; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (535 aa)
   
          0.448
POPTR_0011s11320.1
Putative 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate family protein (442 aa)
         
  0.432
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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