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POPTR_0002s00540.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s00540.1" - DEAD/DEAH box helicase family protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s00540.1DEAD/DEAH box helicase family protein (1112 aa)    
Predicted Functional Partners:
POPTR_0010s17750.1
Uncharacterized protein (963 aa)
     
 
  0.987
POPTR_0008s08470.1
FF domain-containing family protein (283 aa)
     
 
  0.987
POPTR_0017s07760.1
Uncharacterized protein (1267 aa)
     
 
  0.974
POPTR_0001s31840.1
Uncharacterized protein (1128 aa)
     
 
  0.973
POPTR_0019s03520.1
annotation not available (1019 aa)
     
 
  0.946
POPTR_0013s04340.1
Uncharacterized protein (1070 aa)
     
 
  0.945
POPTR_0016s10860.1
annotation not available (185 aa)
     
 
  0.940
POPTR_0016s10840.1
annotation not available (71 aa)
     
 
  0.940
POPTR_0006s12310.1
Uncharacterized protein (331 aa)
     
 
  0.940
POPTR_0010s10480.1
Splicing factor PWI domain-containing family protein (894 aa)
     
 
  0.931
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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