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STRINGSTRING
POPTR_0002s00880.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s00880.1" - Phosphatase 2C family protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s00880.1Phosphatase 2C family protein (363 aa)    
Predicted Functional Partners:
POPTR_0019s04740.1
Uncharacterized protein (530 aa)
           
  0.760
POPTR_0001s02840.1
Tobamovirus multiplication protein 2B (147 aa)
           
  0.631
POPTR_0003s02970.1
RNA-binding family protein (281 aa)
           
  0.599
POPTR_0003s16280.1
Uncharacterized protein (1247 aa)
       
 
  0.591
POPTR_0001s13180.1
CTD phosphatase-like protein 3 (1190 aa)
       
 
  0.591
POPTR_0010s07720.1
Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family (206 aa)
           
  0.590
POPTR_0008s17100.1
Eukaryotic translation initiation factor 4E isoform family protein; Belongs to the eukaryotic initiation factor 4E family (203 aa)
           
  0.590
POPTR_0016s12200.1
annotation not available (830 aa)
       
 
  0.579
POPTR_0006s10030.1
Uncharacterized protein (444 aa)
       
 
  0.579
POPTR_0010s06250.1
Uncharacterized protein (1729 aa)
     
   
  0.537
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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