STRINGSTRING
POPTR_0002s01730.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s01730.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s01730.1Predicted protein (210 aa)    
Predicted Functional Partners:
POPTR_0022s00530.1
Predicted protein (706 aa)
       
 
  0.768
POPTR_0019s10660.1
Uncharacterized protein (291 aa)
       
 
  0.768
POPTR_0015s08910.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PED6_POPTR] (282 aa)
       
 
  0.768
POPTR_0009s08320.1
Predicted protein (682 aa)
       
 
  0.768
POPTR_0004s23310.1
Predicted protein (766 aa)
       
 
  0.768
POPTR_0001s29210.1
Predicted protein (683 aa)
       
 
  0.768
POPTR_0001s29170.1
Predicted protein (282 aa)
       
 
  0.768
POPTR_0021s00590.1
Arogenate/prephenate dehydratase [source-UniProtKB/TrEMBL;Acc-B9HZ50_POPTR]; Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine (400 aa)
       
      0.459
POPTR_0009s15100.1
Arogenate/prephenate dehydratase [source-UniProtKB/TrEMBL;Acc-B9HQT5_POPTR]; Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine (446 aa)
       
      0.459
POPTR_0008s20010.1
Arogenate/prephenate dehydratase [source-UniProtKB/TrEMBL;Acc-B9HM73_POPTR]; Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine (398 aa)
       
      0.459
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (8%) [HD]