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POPTR_0002s01900.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s01900.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s01900.1Uncharacterized protein (277 aa)    
Predicted Functional Partners:
POPTR_0001s07110.1
Uncharacterized protein (301 aa)
     
 
  0.875
POPTR_0009s03090.1
Uncharacterized protein (724 aa)
     
 
  0.872
POPTR_0015s00340.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P9B9_POPTR] (154 aa)
     
 
  0.813
POPTR_0015s00330.2
Uncharacterized protein (154 aa)
     
 
  0.813
POPTR_0019s11700.1
Ribosomal protein L7Ae/L30e/S12e/Gadd45 (128 aa)
     
 
  0.670
POPTR_0014s10780.1
Ribosomal protein L7Ae/L30e/S12e/Gadd45 (183 aa)
     
 
  0.670
POPTR_0013s12110.1
Ribosomal protein L7Ae/L30e/S12e/Gadd45 (128 aa)
     
 
  0.670
POPTR_0004s23710.1
Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family (251 aa)
           
  0.505
POPTR_0003s15370.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHV7_POPTR] (325 aa)
           
  0.505
PtrProT5
Uncharacterized protein; Proline transporter [source-UniProtKB/TrEMBL;Acc-B9HL46_POPTR] (458 aa)
           
  0.497
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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