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POPTR_0002s02020.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s02020.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s02020.1Uncharacterized protein; Belongs to the SKP1 family (157 aa)    
Predicted Functional Partners:
POPTR_0006s14360.1
annotation not available (93 aa)
     
 
  0.905
POPTR_0001s16760.1
Ring box family protein (110 aa)
     
 
  0.902
CKS1
Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function (129 aa)
       
 
  0.883
POPTR_0017s00870.1
Uncharacterized protein (359 aa)
     
 
  0.874
POPTR_0004s06940.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P933_POPTR] (358 aa)
     
 
  0.874
POPTR_0017s06540.1
Uncharacterized protein (99 aa)
     
 
  0.829
POPTR_0010s10320.1
Cullin family protein; Belongs to the cullin family (733 aa)
     
 
  0.812
POPTR_0008s14780.1
Cullin family protein; Belongs to the cullin family (732 aa)
     
 
  0.812
POPTR_0002s17400.1
Transducin family protein (2434 aa)
       
 
  0.788
POPTR_0002s08310.1
annotation not available (347 aa)
     
 
  0.781
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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