STRINGSTRING
POPTR_0002s02250.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s02250.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s02250.1Predicted protein (258 aa)    
Predicted Functional Partners:
POPTR_0006s19720.1
Predicted protein (624 aa)
   
  0.978
POPTR_0018s11500.1
Predicted protein (622 aa)
   
  0.977
POPTR_0002s15680.1
Uncharacterized protein (198 aa)
   
  0.942
POPTR_0014s07480.1
Predicted protein (365 aa)
   
  0.941
POPTR_0009s00670.1
Uncharacterized protein (114 aa)
         
 
0.800
POPTR_0002s07410.1
Predicted protein (356 aa)
     
      0.642
POPTR_0004s07070.1
Predicted protein (685 aa)
     
   
  0.641
POPTR_0005s20910.1
Predicted protein (357 aa)
     
      0.633
POPTR_0017s00980.1
Predicted protein (683 aa)
     
   
  0.628
POPTR_0009s06900.1
Uncharacterized protein (378 aa)
     
      0.625
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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