STRINGSTRING
POPTR_0002s02490.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s02490.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s02490.1Predicted protein (443 aa)    
Predicted Functional Partners:
POPTR_0018s12420.1
Predicted protein (311 aa)
     
  0.989
POPTR_0017s12880.1
Predicted protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (437 aa)
     
        0.987
POPTR_0004s11890.1
Predicted protein (97 aa)
     
        0.987
POPTR_0004s11880.1
Predicted protein (118 aa)
     
        0.987
POPTR_0019s07170.1
Predicted protein (853 aa)
     
        0.894
POPTR_0013s07710.1
Predicted protein (913 aa)
     
        0.894
POPTR_0014s01520.1
Predicted protein (818 aa)
     
        0.893
POPTR_0002s11830.1
Predicted protein (819 aa)
     
        0.893
POPTR_0007s06790.1
Predicted protein (1033 aa)
     
        0.889
POPTR_0005s08760.1
Predicted protein (962 aa)
     
        0.889
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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