STRINGSTRING
POPTR_0002s02980.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s02980.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s02980.1Predicted protein (728 aa)    
Predicted Functional Partners:
POPTR_0008s13970.1
Hypothetical protein (172 aa)
       
    0.657
POPTR_0003s17700.1
Predicted protein (785 aa)
     
  0.581
POPTR_0002s24320.1
Predicted protein (777 aa)
     
  0.581
POPTR_0004s08580.1
Predicted protein (898 aa)
     
 
    0.579
POPTR_0017s11160.1
Predicted protein (334 aa)
     
    0.574
POPTR_0004s13540.1
Predicted protein (334 aa)
     
    0.574
POPTR_0019s04230.1
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9IPG0_POPTR] (873 aa)
     
    0.572
POPTR_0013s04820.1
Predicted protein (980 aa)
     
    0.572
POPTR_0005s16280.1
Histone acetyltransferase [source-UniProtKB/TrEMBL;Acc-B9H794_POPTR] (448 aa)
     
    0.572
POPTR_0002s09010.1
Histone acetyltransferase [source-UniProtKB/TrEMBL;Acc-B9GUG6_POPTR] (445 aa)
     
    0.572
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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