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POPTR_0002s03090.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s03090.1" - AP2/ERF domain-containing transcription factor [source:UniProtKB/TrEMBL in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s03090.1AP2/ERF domain-containing transcription factor [source-UniProtKB/TrEMBL;Acc-B9GRH7_POPTR] (240 aa)    
Predicted Functional Partners:
POPTR_1659s00200.1
Uncharacterized protein (255 aa)
     
        0.470
POPTR_0019s13520.1
Predicted protein (153 aa)
     
        0.470
POPTR_0011s16430.1
Predicted protein (173 aa)
     
        0.470
POPTR_0011s14740.1
Uncharacterized protein (77 aa)
     
        0.470
POPTR_0011s14730.1
Predicted protein (397 aa)
     
        0.470
POPTR_0010s18830.1
Predicted protein (164 aa)
     
        0.470
POPTR_0010s01740.1
Annotation not available (130 aa)
     
        0.470
POPTR_0009s11270.1
Predicted protein (445 aa)
     
        0.470
POPTR_0009s07690.1
Predicted protein (170 aa)
     
        0.470
POPTR_0009s06100.1
Uncharacterized protein (188 aa)
     
        0.470
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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