STRINGSTRING
POPTR_0002s03470.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s03470.1" - 50S ribosomal protein L31 in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s03470.150S ribosomal protein L31 (96 aa)    
Predicted Functional Partners:
POPTR_0010s07920.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHA2_POPTR] (153 aa)
   
  0.989
POPTR_0006s11420.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PC28_POPTR] (224 aa)
   
  0.989
POPTR_0016s14970.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P8K2_POPTR] (227 aa)
   
  0.987
POPTR_0018s03610.1
Predicted protein (229 aa)
   
  0.987
POPTR_0008s16970.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002312554.1] (104 aa)
   
  0.987
POPTR_0011s10720.1
Predicted protein (241 aa)
   
  0.986
POPTR_0001s39310.1
Uncharacterized protein (249 aa)
   
  0.986
POPTR_0013s06700.1
Predicted protein (139 aa)
   
  0.983
POPTR_0001s15230.1
Predicted protein (241 aa)
   
  0.982
POPTR_0001s33710.1
Predicted protein (194 aa)
   
  0.981
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (13%) [HD]