STRINGSTRING
POPTR_0002s03890.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s03890.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s03890.1Predicted protein (389 aa)    
Predicted Functional Partners:
POPTR_0010s04010.1
Uncharacterized protein (114 aa)
       
 
  0.684
POPTR_0004s05800.1
Predicted protein (226 aa)
     
   
  0.644
rbcL
Ribulose bisphosphate carboxylase large chain [source-UniProtKB/Swiss-Prot;Acc-RBL_POPTR]; RuBisCO catalyzes two reactions- the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site (70 aa)
       
 
  0.600
POPTR_0006s04370.1
Predicted protein (420 aa)
           
  0.524
POPTR_0014s16820.1
Predicted protein (995 aa)
     
   
  0.523
POPTR_0007s15080.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHQ9_POPTR] (569 aa)
           
  0.426
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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