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POPTR_0002s04060.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s04060.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s04060.1Predicted protein (341 aa)    
Predicted Functional Partners:
POPTR_0005s16180.1
Predicted protein; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (899 aa)
     
   
  0.520
POPTR_0002s08930.1
Predicted protein; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (909 aa)
     
   
  0.518
POPTR_0001s17630.1
2-oxoglutarate-dependent dioxygenase [source-UniProtKB/TrEMBL;Acc-B9GL07_POPTR] (311 aa)
   
     
0.518
POPTR_0019s04030.1
Ammonium transporter [source-UniProtKB/TrEMBL;Acc-B9IPE2_POPTR] (506 aa)
     
        0.483
POPTR_0015s04180.1
Predicted protein (387 aa)
     
        0.470
POPTR_0009s02760.1
Predicted protein (588 aa)
     
        0.470
POPTR_0006s09520.1
Laccase 110a [source-UniProtKB/TrEMBL;Acc-B9HC76_POPTR]; Lignin degradation and detoxification of lignin-derived products (562 aa)
     
        0.470
POPTR_0004s01050.1
Predicted protein (345 aa)
     
        0.470
POPTR_0003s10210.1
Predicted protein (529 aa)
     
        0.470
POPTR_0001s07380.1
Predicted protein (330 aa)
     
        0.470
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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