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POPTR_0002s04380.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s04380.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s04380.1Uncharacterized protein (492 aa)    
Predicted Functional Partners:
POPTR_0002s25580.1
Uncharacterized protein; Belongs to the carbohydrate kinase PfkB family (362 aa)
     
   
  0.827
POPTR_0004s15940.1
PfkB-type carbohydrate kinase family protein (419 aa)
   
   
  0.741
POPTR_0004s15880.1
annotation not available (415 aa)
   
   
  0.741
POPTR_0015s04720.1
Uncharacterized protein (1218 aa)
   
   
  0.635
POPTR_0010s20590.1
Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family (719 aa)
         
  0.630
POPTR_0008s06060.1
Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family (691 aa)
         
  0.630
POPTR_0015s07330.1
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family (223 aa)
   
 
  0.601
POPTR_0001s34010.1
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family (226 aa)
   
 
  0.601
POPTR_0016s11690.1
Uncharacterized protein (485 aa)
     
   
  0.597
POPTR_0008s09690.1
Uncharacterized protein (607 aa)
           
  0.590
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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