Groups of genes that are frequently observed in each other's genomic neighborhood.
Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Zinc finger family protein (436 aa)
Predicted Functional Partners:
annotation not available (360 aa)
Zinc finger family protein (497 aa)
Uncharacterized protein (445 aa)
Uncharacterized protein (357 aa)
Uncharacterized protein (636 aa)
Quinone reductase family protein (203 aa)
Histone 2 [source-UniProtKB/TrEMBL;Acc-B9MZP0_POPTR]; Belongs to the histone H2A family (142 aa)
Histone 2 (HTA911), mRNA [source-RefSeq DNA_predicted;Acc-XM_002328500.1]; Belongs to the histone H2A family (142 aa)
Histone 2 [source-UniProtKB/TrEMBL;Acc-B9I828_POPTR]; Belongs to the histone H2A family (185 aa)
Histone 2 [source-UniProtKB/TrEMBL;Acc-B9I7J5_POPTR]; Belongs to the histone H2A family (145 aa)
Your Current Organism:
NCBI taxonomy Id: 3694 Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar