• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
POPTR_0002s04500.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s04500.1" - Zinc finger family protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s04500.1Zinc finger family protein (436 aa)    
Predicted Functional Partners:
POPTR_0004s04660.1
annotation not available (360 aa)
     
 
  0.880
POPTR_0017s04470.1
Zinc finger family protein (497 aa)
       
 
  0.877
POPTR_0011s05530.1
Uncharacterized protein (445 aa)
       
 
  0.877
POPTR_0007s01040.1
Uncharacterized protein (357 aa)
       
 
  0.877
POPTR_0015s06910.1
Uncharacterized protein (636 aa)
       
      0.683
POPTR_0009s04900.1
Quinone reductase family protein (203 aa)
       
      0.683
POPTR_0369s00210.1
Histone 2 [source-UniProtKB/TrEMBL;Acc-B9MZP0_POPTR]; Belongs to the histone H2A family (142 aa)
       
 
  0.668
POPTR_0369s00200.1
Histone 2 (HTA911), mRNA [source-RefSeq DNA_predicted;Acc-XM_002328500.1]; Belongs to the histone H2A family (142 aa)
       
 
  0.668
HTA910
Histone 2 [source-UniProtKB/TrEMBL;Acc-B9I828_POPTR]; Belongs to the histone H2A family (185 aa)
       
 
  0.668
HTA913
Histone 2 [source-UniProtKB/TrEMBL;Acc-B9I7J5_POPTR]; Belongs to the histone H2A family (145 aa)
       
 
  0.668
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (10%) [HD]