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POPTR_0002s05290.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s05290.1" - Silencing group B protein [source:UniProtKB/TrEMBL in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s05290.1Silencing group B protein [source-UniProtKB/TrEMBL;Acc-B9GSM8_POPTR] (253 aa)    
Predicted Functional Partners:
POPTR_0013s14900.1
Predicted protein (1041 aa)
       
 
  0.978
POPTR_0010s14040.1
Predicted protein (313 aa)
       
      0.919
POPTR_0008s11460.1
Predicted protein (313 aa)
       
      0.919
POPTR_0003s05540.1
Predicted protein (796 aa)
     
 
  0.865
POPTR_0001s17830.1
Predicted protein (900 aa)
     
 
  0.865
POPTR_0001s17810.1
Predicted protein (259 aa)
     
 
  0.865
POPTR_0001s17800.1
Predicted protein (370 aa)
     
 
  0.865
POPTR_0025s00790.1
Predicted protein (723 aa)
       
  0.833
POPTR_0018s12570.1
Predicted protein (229 aa)
       
  0.833
POPTR_0006s06370.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHZ2_POPTR] (722 aa)
       
  0.833
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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