STRINGSTRING
POPTR_0002s05400.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s05400.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s05400.1Predicted protein (339 aa)    
Predicted Functional Partners:
POPTR_0013s05010.1
Predicted protein (313 aa)
     
        0.596
POPTR_0019s04620.1
Predicted protein (313 aa)
     
        0.587
POPTR_0082s00210.1
Predicted protein (295 aa)
     
        0.468
POPTR_0010s01790.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002314349.1] (264 aa)
     
        0.468
POPTR_0008s22230.1
Predicted protein (298 aa)
     
        0.468
POPTR_0008s22190.1
Annotation not available (286 aa)
     
        0.468
POPTR_0008s22170.1
Predicted protein (284 aa)
     
        0.468
POPTR_0003s13780.1
High mobility group family [source-UniProtKB/TrEMBL;Acc-B9GXG3_POPTR] (447 aa)
     
        0.461
POPTR_0001s10410.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHY2_POPTR] (498 aa)
     
        0.461
POPTR_0005s18580.1
Predicted protein (323 aa)
     
        0.448
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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