STRINGSTRING
POPTR_0002s05560.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s05560.1" - annotation not available in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s05560.1annotation not available (77 aa)    
Predicted Functional Partners:
POPTR_0004s21980.1
Uncharacterized protein (365 aa)
       
 
  0.827
POPTR_0004s21970.3
Ankyrin repeat-containing protein 2; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PDB7_POPTR] (366 aa)
       
 
  0.827
POPTR_0001s16150.1
Plasma membrane ATPase; Autoinhibited H+ ATPase (950 aa)
           
  0.601
AMI3
Amidase family protein [source-UniProtKB/TrEMBL;Acc-B9IEC4_POPTR] (592 aa)
           
  0.597
AMI4
Amidase family protein [source-UniProtKB/TrEMBL;Acc-B9I2E5_POPTR] (593 aa)
           
  0.597
POPTR_0017s05470.1
Mce-related family protein (384 aa)
           
  0.590
POPTR_0007s01670.1
Mce-related family protein (384 aa)
           
  0.590
POPTR_0003s20390.1
Uncharacterized protein (682 aa)
           
  0.589
POPTR_0001s05640.1
Uncharacterized protein (512 aa)
           
  0.589
POPTR_0002s18650.1
annotation not available (233 aa)
           
  0.588
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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