STRINGSTRING
CYP78A20 protein (Populus trichocarpa) - STRING interaction network
"CYP78A20" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CYP78A20Uncharacterized protein; Cytochrome P450 [source-UniProtKB/TrEMBL;Acc-B9GT45_POPTR] (534 aa)    
Predicted Functional Partners:
CYP97A7
Uncharacterized protein; Cytochrome P450 [source-UniProtKB/TrEMBL;Acc-B9N168_POPTR] (464 aa)
   
     
  0.735
CYP704B3
Cytochrome P450 [source-UniProtKB/TrEMBL;Acc-B9HI89_POPTR] (482 aa)
   
     
  0.728
POPTR_0008s13800.1
Uncharacterized protein (329 aa)
       
 
  0.622
ACLL14
4-coumarate--CoA ligase family protein; Acyl-coa ligase [source-UniProtKB/TrEMBL;Acc-B9GMK1_POPTR] (545 aa)
     
   
  0.597
POPTR_0010s06090.1
Uncharacterized protein (557 aa)
           
  0.594
POPTR_0008s18340.1
RNA-binding family protein (583 aa)
           
  0.594
POPTR_0003s17130.1
annotation not available (366 aa)
     
   
  0.581
POPTR_0016s06430.1
Uncharacterized protein (582 aa)
           
  0.540
POPTR_0006s21270.1
annotation not available (127 aa)
           
  0.540
POPTR_0006s15820.1
Uncharacterized protein (538 aa)
           
  0.540
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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