STRINGSTRING
POPTR_0002s06660.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s06660.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s06660.1Predicted protein (437 aa)    
Predicted Functional Partners:
POPTR_0007s12690.1
Predicted protein (497 aa)
     
  0.771
POPTR_0005s12580.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PI24_POPTR] (481 aa)
     
  0.770
POPTR_0017s06190.1
Predicted protein (317 aa)
     
  0.747
POPTR_0013s01700.1
Predicted protein (296 aa)
     
  0.732
POPTR_0008s10210.1
Predicted protein (396 aa)
     
 
  0.731
POPTR_0015s04100.1
Predicted protein (780 aa)
     
 
  0.730
POPTR_0290s00220.1
Uncharacterized protein (350 aa)
     
 
  0.727
POPTR_0015s00690.1
Predicted protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (260 aa)
     
  0.726
POPTR_0014s12440.1
Predicted protein (296 aa)
     
  0.726
POPTR_0012s02870.1
Predicted protein (279 aa)
     
  0.726
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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