STRINGSTRING
POPTR_0002s06940.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s06940.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s06940.1Predicted protein (97 aa)    
Predicted Functional Partners:
POPTR_0009s07670.1
Predicted protein (88 aa)
     
  0.996
POPTR_0001s28450.1
Predicted protein (88 aa)
     
  0.996
POPTR_0016s07880.1
Predicted protein (123 aa)
     
  0.994
POPTR_0006s22770.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PB05_POPTR] (129 aa)
     
  0.994
POPTR_0008s07780.1
Predicted protein (134 aa)
   
  0.992
POPTR_0001s28460.1
Predicted protein (98 aa)
     
  0.991
POPTR_0010s18590.1
Predicted protein; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (91 aa)
     
  0.991
POPTR_0018s09990.1
Predicted protein; Probable common Sm protein, is found in U1 and U2 snRNPs and may be part of the spliceosome (66 aa)
     
  0.990
POPTR_0003s01050.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PBV8_POPTR] (93 aa)
     
  0.990
POPTR_0002s20720.1
Predicted protein (150 aa)
     
  0.990
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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