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POPTR_0002s07480.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s07480.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s07480.1Uncharacterized protein (339 aa)    
Predicted Functional Partners:
POPTR_0002s18850.1
Uncharacterized protein; Multidrug/pheromone exporter, MDR family, ABC transporter family (1275 aa)
     
        0.468
POPTR_0002s21490.1
Ribonuclease 3 family protein (287 aa)
     
        0.412
POPTR_0009s03870.1
Uncharacterized protein (293 aa)
     
        0.406
POPTR_0019s11830.1
Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family (567 aa)
     
        0.405
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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