STRINGSTRING
POPTR_0002s07510.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s07510.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s07510.1Predicted protein (211 aa)    
Predicted Functional Partners:
POPTR_0016s10930.1
Predicted protein (230 aa)
     
      0.788
POPTR_0006s12080.1
Predicted protein (233 aa)
     
      0.788
POPTR_0002s13650.1
Predicted protein (208 aa)
   
 
0.638
POPTR_0003s08490.1
Uncharacterized protein (179 aa)
   
 
0.629
POPTR_0005s07680.1
Predicted protein (207 aa)
   
 
0.617
POPTR_0011s04360.1
Predicted protein (209 aa)
     
      0.608
POPTR_0004s03550.1
Predicted protein (209 aa)
       
      0.599
POPTR_0001s03090.1
Uncharacterized protein (93 aa)
     
 
0.580
POPTR_0011s09170.1
Predicted protein (703 aa)
     
 
  0.568
POPTR_0009s07980.1
Predicted protein (940 aa)
     
 
  0.568
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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