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POPTR_0002s07940.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s07940.1" - Hypothetical protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s07940.1Hypothetical protein (532 aa)    
Predicted Functional Partners:
POPTR_0009s07740.1
Predicted protein; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles (1690 aa)
     
    0.705
POPTR_0011s14240.1
Predicted protein (770 aa)
     
  0.699
POPTR_0004s01640.1
Predicted protein (757 aa)
     
  0.699
POPTR_0010s19420.1
Predicted protein; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles (1705 aa)
       
    0.698
POPTR_0008s07070.1
Predicted protein; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles (1705 aa)
       
    0.698
POPTR_0001s28540.1
Predicted protein; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles (1810 aa)
       
    0.698
POPTR_0003s05450.1
Predicted protein (858 aa)
     
  0.692
POPTR_0001s18040.1
Predicted protein (852 aa)
     
  0.692
POPTR_0022s00530.1
Predicted protein (706 aa)
       
  0.691
POPTR_0019s10660.1
Uncharacterized protein (291 aa)
       
  0.691
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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