Groups of genes that are frequently observed in each other's genomic neighborhood.
Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Beta-galactosidase (816 aa)
Predicted Functional Partners:
Methionyl-tRNA synthetase family protein; Belongs to the class-I aminoacyl-tRNA synthetase family (610 aa)
Uncharacterized protein (195 aa)
MIF4G domain-containing family protein (933 aa)
Hexosyltransferase; Glycosyltransferase, CAZy family GT8; Belongs to the glycosyltransferase 8 family (665 aa)
Hexosyltransferase; Glycosyltransferase; Belongs to the glycosyltransferase 8 family (648 aa)
Subtilase family protein (766 aa)
WD-40 repeat family protein (785 aa)
WD-40 repeat family protein (777 aa)
annotation not available (249 aa)
annotation not available (520 aa)
Your Current Organism:
NCBI taxonomy Id: 3694 Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar