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STRINGSTRING
POPTR_0002s08120.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s08120.1" - Beta-galactosidase in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s08120.1Beta-galactosidase (816 aa)    
Predicted Functional Partners:
POPTR_0010s21430.1
Methionyl-tRNA synthetase family protein; Belongs to the class-I aminoacyl-tRNA synthetase family (610 aa)
       
      0.772
POPTR_0014s12390.1
Uncharacterized protein (195 aa)
           
  0.652
POPTR_0016s12870.1
MIF4G domain-containing family protein (933 aa)
     
        0.650
POPTR_0016s00360.1
Hexosyltransferase; Glycosyltransferase, CAZy family GT8; Belongs to the glycosyltransferase 8 family (665 aa)
           
  0.599
POPTR_0006s00320.1
Hexosyltransferase; Glycosyltransferase; Belongs to the glycosyltransferase 8 family (648 aa)
           
  0.599
POPTR_0005s18880.1
Subtilase family protein (766 aa)
     
   
  0.584
POPTR_0003s17700.2
WD-40 repeat family protein (785 aa)
           
  0.582
POPTR_0002s24320.1
WD-40 repeat family protein (777 aa)
           
  0.582
POPTR_0001s14580.1
annotation not available (249 aa)
           
  0.582
POPTR_0001s14560.1
annotation not available (520 aa)
           
  0.582
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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