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POPTR_0002s08690.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s08690.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
POPTR_0002s08690.1Predicted protein; 3’-5’-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3’ end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3’ (1099 aa)    
Predicted Functional Partners:
POPTR_0003s19390.1
Predicted protein (320 aa)
     
  0.987
POPTR_0013s04730.1
Uncharacterized protein (171 aa)
     
  0.987
POPTR_0014s16420.1
Predicted protein (287 aa)
     
  0.987
POPTR_0014s09000.1
Predicted protein (241 aa)
     
  0.986
POPTR_0015s08670.1
Predicted protein (79 aa)
     
  0.981
POPTR_0012s08180.1
Predicted protein (242 aa)
     
  0.981
POPTR_0018s00300.1
Predicted protein (243 aa)
     
  0.979
POPTR_0006s25550.1
Hypothetical protein (193 aa)
     
  0.979
POPTR_0009s05220.1
Uncharacterized protein (464 aa)
     
  0.978
POPTR_0001s26010.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PFL6_POPTR] (403 aa)
     
  0.978
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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