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STRINGSTRING
POPTR_0002s09100.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s09100.1" - Rhomboid-like protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s09100.1Rhomboid-like protein (370 aa)    
Predicted Functional Partners:
POPTR_0004s13440.1
Uncharacterized protein (467 aa)
       
 
  0.804
CNX5
Adenylyltransferase and sulfurtransferase MOCS3; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers URM1 and MOCS2A. Its N-terminus first activates URM1 and MOCS2A as acyl-adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 and MOCS2A to form thiocarboxylation (-COSH) of their C-terminus. The reaction probably involves hydrogen sulfide t [...] (464 aa)
   
   
  0.757
POPTR_0015s07780.1
LOB domain protein 27 (271 aa)
           
  0.756
POPTR_0012s07390.1
Uncharacterized protein (269 aa)
           
  0.756
POPTR_0014s13130.1
Transducin family protein (534 aa)
     
   
  0.745
POPTR_0002s22790.1
Uncharacterized protein (522 aa)
     
   
  0.745
POPTR_0010s00720.1
Rhomboid family protein (328 aa)
           
  0.741
POPTR_0006s24380.1
Uncharacterized protein (331 aa)
     
   
  0.736
POPTR_0010s22770.1
Uncharacterized protein (308 aa)
           
  0.733
POPTR_0008s04070.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PE89_POPTR] (303 aa)
           
  0.733
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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