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POPTR_0002s09600.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s09600.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s09600.1Uncharacterized protein (640 aa)    
Predicted Functional Partners:
POPTR_0001s00700.1
Uncharacterized protein (564 aa)
           
  0.745
POPTR_0010s06090.1
Uncharacterized protein (557 aa)
     
   
  0.603
POPTR_0008s18340.1
RNA-binding family protein (583 aa)
     
   
  0.603
N21L3
Nucleoside phosphatase family protein; Mtn21-like protein [source-UniProtKB/TrEMBL;Acc-B9N0R4_POPTR]; Belongs to the GDA1/CD39 NTPase family (759 aa)
           
  0.602
POPTR_0016s07270.1
Cytokinin riboside 5’-monophosphate phosphoribohydrolase; Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms (184 aa)
           
  0.599
POPTR_0006s22120.1
Cytokinin riboside 5’-monophosphate phosphoribohydrolase; Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms (215 aa)
           
  0.599
POPTR_0010s00780.1
Pumilio/Puf RNA-binding domain-containing family protein (655 aa)
     
 
  0.593
POPTR_0008s23200.1
Pumilio/Puf RNA-binding domain-containing family protein (655 aa)
     
 
  0.593
POPTR_0013s08210.1
Uncharacterized protein (376 aa)
     
   
  0.586
POPTR_0016s12480.1
Uncharacterized protein (429 aa)
           
  0.580
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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