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POPTR_0002s09970.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s09970.1" - 40S ribosomal protein S6 in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s09970.140S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family (249 aa)    
Predicted Functional Partners:
POPTR_0005s21640.1
Ribosomal protein 1; Belongs to the universal ribosomal protein uL3 family (389 aa)
   
 
  0.991
POPTR_0002s06680.1
Ribosomal protein 1; Belongs to the universal ribosomal protein uL3 family (389 aa)
   
 
  0.991
POPTR_0005s05120.1
40S ribosomal protein S24; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P8Z2_POPTR]; Belongs to the eukaryotic ribosomal protein eS24 family (134 aa)
 
 
  0.991
POPTR_0008s15190.1
40S ribosomal protein S24; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PC59_POPTR]; Belongs to the eukaryotic ribosomal protein eS24 family (134 aa)
 
 
  0.991
POPTR_0010s09820.1
40S ribosomal protein S24; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PC05_POPTR]; Belongs to the eukaryotic ribosomal protein eS24 family (134 aa)
 
 
  0.991
POPTR_0008s06620.1
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10 (322 aa)
   
 
  0.991
POPTR_0010s19860.1
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10 (320 aa)
   
 
  0.991
POPTR_0018s14220.1
Predicted protein (165 aa)
   
 
  0.991
POPTR_0019s15250.1
60S ribosomal protein L10 (220 aa)
     
 
  0.991
POPTR_0013s15560.1
60S ribosomal protein L10 (220 aa)
     
 
  0.991
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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