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POPTR_0002s10100.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s10100.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s10100.1Predicted protein (1011 aa)    
Predicted Functional Partners:
POPTR_0009s15460.1
Predicted protein (976 aa)
     
   
  0.585
POPTR_0013s07880.1
Predicted protein (268 aa)
     
   
  0.571
POPTR_0011s16690.1
Predicted protein; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP (394 aa)
     
   
  0.543
POPTR_0016s14340.1
Predicted protein (564 aa)
     
   
  0.541
POPTR_0010s16220.1
Predicted protein (765 aa)
     
   
  0.540
POPTR_0001s47010.1
Predicted protein; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP (394 aa)
           
  0.532
POPTR_0006s10870.1
Predicted protein (550 aa)
           
  0.529
POPTR_0008s13810.1
Uncharacterized protein (439 aa)
     
   
  0.459
POPTR_0011s14690.1
Predicted protein (299 aa)
           
  0.424
POPTR_0001s46210.1
Predicted protein; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP (428 aa)
           
  0.424
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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