STRINGSTRING
POPTR_0002s10490.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s10490.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s10490.1Predicted protein (173 aa)    
Predicted Functional Partners:
POPTR_0015s10330.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PFU4_POPTR] (364 aa)
   
 
  0.569
POPTR_0014s13660.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PI59_POPTR] (404 aa)
       
  0.559
POPTR_0012s09570.1
Predicted protein (338 aa)
       
  0.559
POPTR_0010s17930.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHA3_POPTR] (422 aa)
       
  0.559
POPTR_0010s06560.1
Predicted protein [source-UniProtKB/TrEMBL;Acc-A9P807_POPTR] (341 aa)
       
  0.559
POPTR_0008s17940.1
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9HLA3_POPTR] (341 aa)
       
  0.559
POPTR_0008s08340.1
Predicted protein (422 aa)
       
  0.559
POPTR_0005s27550.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PG13_POPTR] (452 aa)
       
  0.559
POPTR_0002s22600.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PF03_POPTR] (403 aa)
       
  0.559
POPTR_0002s00840.1
Predicted protein (474 aa)
       
  0.559
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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